Cyclin related genes strongly enriched at 04 dpp in the cucum ber

Cyclin related genes strongly enriched at 04 dpp in the cucum ber fruit transcriptome, such as putative homologs of CDKB1.2, CDKB2.2, CYCB12. CYCD3.1, CYCD3.3, CYCD5.1, were among those associated with the mitosis and post mitosis phases in the Arabidopsis interactome. Elevated expression of several of these genes was also observed during fruit set in pollinated vs. unpolli nated apple and cucumber flowers. In contrast, the homolog of CDKA.1, which was uni formly represented in the young cucumber fruit transcrip tome, was associated with cyclin complexes throughout the Arabidopsis cell cycle. The categories of plastid and chloroplast also were sig nificantly enriched in the 04 dpp group, then declined with age. This is consistent with the decrease in chloro phyll observed after 4dpp.
chlorophyll content per gram fresh weight peaked at 4 dpp, and then decreased until 12 dpp. The assembled contigs included 91 tran selleck chemical scripts whose homologs in Arabidopsis had annotations including one or more of the following terms chlorophyll, chloroplast, photosystem, or thylakoid. Overall patterns of transcript abundance for these genes paralleled chlorophyll content in the develop ing fruit. K means cluster analysis allowed for further identifica tion of transcripts showing progressive patterns of repre sentation with fruit age. The chloroplast and other photosynthesis related genes described above, actin related proteins, extensins, expansins, cellulose synthases, pectinase modifying enzymes, aquaporins, vacu olar HATPases, and phloem filament and lectin proteins, were among those strongly represented, as has been observed for other rapidly growing fleshy fruits such as to mato, apple, grape, and watermelon.
The major latex protein related genes also exhibited peak levels at 8 dpp, including two extremely highly transcribed genes that together accounted for more than 17,000 reads. Putative homologs of vacuolar ATP synthase kinase inhibitor p38 inhibitors subunits B, D, H and P2 showed coordinate transcript abundance, with comparable levels increasing steadily until 8 dpp, and then gradually declining Two very highly represented homologs of the vacuolar aquaporin gene, gamma tip tonoplast intrinsic protein, also peaked at 4 8dpp. All of the cucurbit specific phloem proteins listed in Table 1 and the four putative homologs of the Arabidop sis phloem protein A2 family members observed in the data set peaked somewhat later, at 816 dpp with minimal transcript levels at 0 and 4 dpp.
Cucurbits are characterized by a unique and functionally divergent network of extrafascicular phloem external to the vascular bundles. The highly expressed pro teinaceous phloem filaments, comprised of the cucurbit specific PP1 proteins, and the more widely distributed PP2 phloem lectin proteins, were found to be pri marily associated with the extrafasicular phloem.

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