Self-organising systems do not always need spatial S–R signalling, and a recent band-forming system

relied entirely on a temporal cue [ 36]. Our own work took a systematic approach to explore band-patterning S–R networks [37••]. By exploring the 3-node network ‘design space’ exhaustively, we found that only a finite number of mechanisms can IWR-1 molecular weight achieve stripe formation (Figure 3); we built all of these different mechanisms on a single flexible, synthetic biology scaffold, while developing an engineering method to ensure that networks function by a particular mechanism. Controlling mechanism precisely is essential to further progress in synthetic biology. The examples above are based on one class of RG7204 price signalling agent:

small diffusible chemical molecules. The information content of the molecules themselves is rather low, and the message conveyed is encoded in the amount of signal transferred. In an important conceptual leap, Ortiz and Endy are exploring methods of information transfer via DNA sequences encoded in the bacteriophage M13 [38]. Such methods have the potential for complex, high-content information transfer. Two-way communication, also employing diffusing signals between cells, has led to investigations of the computational potential of artificial ecosystems. For example, Brenner et al. achieved an AND-gate logic in E. coli, where signals from two complementary cell types had to accumulate to give an output, in the context of a cooperative microbial biofilm [ 39•]. A similar system, involving obligatory cooperation in yeast, explored the range of conditions that give rise to sustainable two-way codependence [ 40]. Predator-prey systems exhibit different two-way communication, involving negative

feedback cycles, and have been built synthetically in E. coli, using microchemostats [ 41]. Synthetic ecosystems have even used bacterial and mammalian cell mixtures, leading to social behaviours like commensalism, ammensalism, mutualism, parasitism, and predator–prey oscillations [ 42]. Oscillatory systems, employing delayed negative feedback, are a favourite engineering target for synthetic biology, but a recent study elegantly employed this website an extra S–R layer to synchronise the oscillations in a population of bacterial cells [43]. An AHL system coupled cells to each other, ensuring that their oscillations occurred in phase. Coupling synthetic gene networks to intracellular S–R systems can lead to ‘sociability’ and reinforced population behaviours [44]. Synthetic biology in yeast, plants and mammals is sometimes seen as playing catch-up with its bacterial counterpart, but there is notable progress in engineering S–R systems. The first synthetic, eukaryotic cell-cell communication system was in yeast and employed a plant signalling hormone from Arabidopsis (cytokinin) to make positive feedback circuits [ 45•].