However, the production and handling of these nanophotonics structures is costly and serial by nature. Since molecules are not specifically placed in the centre of the structures, they experience varying levels of fluorescence

quenching due to the distribution of distances to the metallic walls yielding heterogeneous signals. Instead of physically suppressing the light field around the BIBF1120 fluorophore by means of metals, an alternative approach is to locally enhance fluorescence using optical antennas (Figure 3d) [43]. The interaction of metal nanostructures with fluorescent dyes is very complex and can involve fluorescence increase by increasing the local excitation field and the radiative rate of the fluorescent dye. On the other hand, fluorescence can also be quenched and the energy be absorbed by the metal Ponatinib nmr nanostructures. More and more reports in recent years have indicated the specific requirements to achieve fluorescence enhancements of up to more than 1000-fold [44]. To exploit this approach for single-molecule assays a reproducible control of the enhancement hot-spots, for example, by the arrangements of noble metal nanoparticles is required. In addition, a handle is essential to place the single-molecule assay of interest in the hot-spot created by the nanoparticle. We anticipate

that DNA origami structures [45 and 46] can represent the scaffold to which not only Montelukast Sodium nanoparticles but also docking sites for single-molecule assays can be attached. DNA origami are self-assembled 2D and 3D nanostructures based on the single-stranded DNA genome of bacteriophage M13 that is folded with the help of hundreds of short oligonucleotides called ‘staple strands’ [45]. Crucially, these nanoassemblies allow a spatially defined arrangement of functional entities like for example biotins,

nanoparticles or docking strands for biomolecular assays [47, 48 and 49]. This has recently been exploited in the form of DNA origami with the shape of a nanopillar [50••]. Nanoparticle dimers attached to the DNA origami act as an antenna and focus the light in their centre where a single-molecule assay might be attached by further protruding DNA strands. At a gap of 23 nm that might be sufficient to place, for example, an enzyme a fluorescence enhancement of up to 100-fold could be obtained. Since the created hot-spots are ultra-small the enhancement is restricted to the molecules in the hotspot and additional labelled species (even present at elevated concentrations) in the surrounding solution vanish compared to the increased signal in the hot-spot. This opens the possibility to solve the concentration issue and allow single molecule assays at elevated concentrations.